annotated_heatmap(data, title[, metadata, ...])
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draw_circle_bar_plot(position, enrichments, ...)
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draw_circle_bar_scale(position, size, ax, ...)
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plot_community_contribution(network, colors)
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_summary_ |
plot_community_network_summary(network, colors)
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plot_community_usage_heatmap(network, colors)
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plot_community_usage_per_sample(network, ...)
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plot_compare_integrations(name1, network1, ...)
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Calculate jaccard similarity of communities from two Network objects. |
plot_feature_mean_variance(dataset[, hue, ...])
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plot_feature_missingness(dataset[, ax, ...])
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plot_feature_statistic_histogram(dataset[, ...])
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plot_features_upset(integration[, figsize, ...])
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Plot overlaps of features between datasets |
plot_geneset_heatmap(df[, ax, axlegend, ...])
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plot_integration_hvf_upset(integration[, ...])
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Plot overlaps of HVFs between datasets in an integration |
plot_metadata_correlation_community_bar(...)
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plot_metadata_correlation_community_network(...)
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plot_metadata_correlation_program_bar(...[, ...])
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plot_metadata_correlation_program_network(...)
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plot_metadata_transfer(network, source, ...)
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Plot heatmap of metadata transfer scores |
plot_overrepresentation_community_bar(...[, ...])
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plot_overrepresentation_community_heatmap(...)
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plot_overrepresentation_community_network(...)
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plot_overrepresentation_program_bar(network, ...)
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plot_overrepresentation_program_network(...)
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plot_pairwise_corr(integration[, ...])
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Plot histograms of the pairwise correlation distribution for each dataset pair. |
plot_pairwise_corr_overlaid(integration[, ...])
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plot_program_correlation_matrix(integration, ...)
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plot_program_network_communities(network, colors)
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plot_program_network_datasets(network, colors)
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plot_program_network_npatients(network, colors)
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plot_program_network_nsamples(network, colors)
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plot_rank_reduction(integration[, figsize])
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plot_representative_program_nes(network, rep_nes)
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plot_sample_entropy(network, colors[, ...])
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plot_sample_numbers(dataset, layer[, ...])
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Bar plot of sample numbers in each category based on a single categorical layer. |
plot_stability_error(dataset[, figsize])
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Adapted from (Alexandrov et. |
plot_stratified_hvf_upset(dataset[, ...])
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Plot overlaps of HVF between strata of the same dataset |
plot_usage_heatmap(dataset, k, colors[, ...])
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