mosaicmpi.dataset.Dataset.get_programs

mosaicmpi.dataset.Dataset.get_programs#

Dataset.get_programs(k: int | Iterable = None, type='cnmf_gep_score') → DataFrame#

Get feature scores for programs.

Parameters:

  • k (Union[int, Iterable], optional) – If an integer or list of integers, returns programs only for specified ranks. Otherwise, returns programs from all ranks. Defaults to None

  • type (str, optional) – “cnmf_gep_score” or “cnmf_gep_tpm”, defaults to “cnmf_gep_score”

Returns:

features × programs matrix

Return type:

pd.DataFrame

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