mosaicmpi.dataset.Dataset
=========================

.. currentmodule:: mosaicmpi.dataset

.. add toctree option to make autodoc generate the pages

.. autoclass:: Dataset

   
   
   .. rubric:: Attributes

   .. autosummary::
      :toctree: .
   
      ~mosaicmpi.dataset.Dataset.has_cnmf_results
      ~mosaicmpi.dataset.Dataset.hvf
      ~mosaicmpi.dataset.Dataset.hvf_stats
      ~mosaicmpi.dataset.Dataset.is_imputed
      ~mosaicmpi.dataset.Dataset.is_normalized
      ~mosaicmpi.dataset.Dataset.mosaicmpi_version
      ~mosaicmpi.dataset.Dataset.patient_id_col
   
   

   
   
   .. rubric:: Methods

   .. autosummary::
      :toctree: .
   
      ~mosaicmpi.dataset.Dataset.add_cnmf_results
      ~mosaicmpi.dataset.Dataset.append_to_history
      ~mosaicmpi.dataset.Dataset.calculate_cnmf_prediction_error
      ~mosaicmpi.dataset.Dataset.cross_validate_imputation
      ~mosaicmpi.dataset.Dataset.from_anndata
      ~mosaicmpi.dataset.Dataset.from_df
      ~mosaicmpi.dataset.Dataset.from_h5ad
      ~mosaicmpi.dataset.Dataset.get_approximation
      ~mosaicmpi.dataset.Dataset.get_category_overrepresentation
      ~mosaicmpi.dataset.Dataset.get_history
      ~mosaicmpi.dataset.Dataset.get_metadata_correlation
      ~mosaicmpi.dataset.Dataset.get_metadata_df
      ~mosaicmpi.dataset.Dataset.get_printable_metadata_type_summary
      ~mosaicmpi.dataset.Dataset.get_programs
      ~mosaicmpi.dataset.Dataset.get_usages
      ~mosaicmpi.dataset.Dataset.impute_knn
      ~mosaicmpi.dataset.Dataset.impute_zeros
      ~mosaicmpi.dataset.Dataset.initialize_cnmf
      ~mosaicmpi.dataset.Dataset.map_gene_ids
      ~mosaicmpi.dataset.Dataset.remove_cnmf_results
      ~mosaicmpi.dataset.Dataset.remove_unfactorizable_features
      ~mosaicmpi.dataset.Dataset.remove_unfactorizable_observations
      ~mosaicmpi.dataset.Dataset.select_hvf
      ~mosaicmpi.dataset.Dataset.select_hvf_cnmf
      ~mosaicmpi.dataset.Dataset.select_hvf_stdeconvolve
      ~mosaicmpi.dataset.Dataset.to_df
      ~mosaicmpi.dataset.Dataset.update_obs
      ~mosaicmpi.dataset.Dataset.validate_cnmf_prediction_errors
      ~mosaicmpi.dataset.Dataset.validate_feature_stats
      ~mosaicmpi.dataset.Dataset.write_h5ad